Appendix: dictionaries
Not all dictionaries mentioned here appear in all knowledgebase instances.
Dictionary | Enriched Unique Terms in the KB |
---|---|
Chemicals / Compounds | |
Antibiotics | 633 |
Chemical Entities of Biological Interest (ChEBI) | 19,988 |
Drugs (DrugBank) | 4,100 |
Lipids | 2,406 |
Toxins (T3DB) | 1,908 |
Functional Annotation | |
Biological Process (GO) | 7,716 |
Cellular Component (GO) | 1,913 |
Molecular Function (GO) | 2,640 |
Pathways (KEGG, Reactome, UniPathway, PANTHER) | 1,925 |
General | |
ATC Ontology (Bioportal) | 1,838 |
DOID Ontology (Bioportal) | 5,147 |
EGO Ontology (Bioportal) | 1,047 |
HP Ontology (Bioportal) | 5,285 |
Human Anatomy | 3,345 |
ICD9 | 821 |
ORDO Ontology (Bioportal) | 7,361 |
PDO Ontology (Bioportal) | 286 |
Genes/Proteins/Transcripts | |
Archaea Genes (EntrezGene) | 6,687 |
Bacteria Genes (EntrezGene) | 45,120 |
Fungi Genes (EntrezGene) | 19,173 |
Human Genes and Proteins (EntrezGene) | 25,617 |
Mutations (tmVar) | 63,413 |
Viruses Genes (EntrezGene) | 6,203 |
Taxonomy | |
Archaea (NCBI Taxonomy) | 761 |
Bacteria (NCBI Taxonomy) | 13,496 |
Fungi (NCBI Taxonomy) | 7,162 |
Viruses (NCBI Taxonomy) | 4,883 |